Passing categorical data to Sklearn Decision Tree
There are several posts about how to encode categorical data to Sklearn Decission trees, but from Sklearn documentation, we got these
Some advantages of decision trees are:
Able to handle both numerical and categorical data. Other techniques are usually specialised in analysing datasets that have only one type of variable. See algorithms for more information.
But running the following script
import pandas as pd from sklearn.tree import DecisionTreeClassifier data = pd.DataFrame() data['A'] = ['a','a','b','a'] data['B'] = ['b','b','a','b'] data['C'] = [0, 0, 1, 0] data['Class'] = ['n','n','y','n'] tree = DecisionTreeClassifier() tree.fit(data[['A','B','C']], data['Class'])
outputs the following error:
Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/usr/local/lib/python2.7/site-packages/sklearn/tree/tree.py", line 154, in fit X = check_array(X, dtype=DTYPE, accept_sparse="csc") File "/usr/local/lib/python2.7/site-packages/sklearn/utils/validation.py", line 377, in check_array array = np.array(array, dtype=dtype, order=order, copy=copy) ValueError: could not convert string to float: b
I know that in R it is possible to pass categorical data, with Sklearn, is it possible?
Contrary to the accepted answer, I would prefer to use tools provided by Scikit-Learn for this purpose. The main reason for doing so is that they can be easily integrated in a Pipeline.
Scikit-Learn itself provides very good classes to handle categorical data. Instead of writing your custom function, you should use
LabelEncoder which is specially designed for this purpose.
Refer to the following code from the documentation:
from sklearn import preprocessing le = preprocessing.LabelEncoder() le.fit(["paris", "paris", "tokyo", "amsterdam"]) le.transform(["tokyo", "tokyo", "paris"])
This automatically encodes them into numbers for your machine learning algorithms. Now this also supports going back to strings from integers. You can do this by simply calling
inverse_transform as follows:
list(le.inverse_transform([2, 2, 1]))
This would return
['tokyo', 'tokyo', 'paris'].
Also note that for many other classifiers, apart from decision trees, such as logistic regression or SVM, you would like to encode your categorical variables using One-Hot encoding. Scikit-learn supports this as well through the
Hope this helps!